HMMSplicer | Tool name | HMMSplicer |
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| URL | http://derisilab.ucsf.edu/index.php?software=105 |
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| Important features | 1. A tool used to discover splice junction in short reads from next generation sequencing platforms.
2. More accurate than existing tools.
3. It can discover splice junction on genes with low expression. |
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| Citations | Dimon MT, Sorber K, DeRisi JL. HMMSplicer: a tool for efficient and sensitive discovery of known and novel splice junctions in RNA-Seq data. PLoS One. 2010 Nov
8;5(11):e13875. PubMed PMID: 21079731; PubMed Central PMCID: PMC2975632.
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Function | RNA seq alignment |
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| Category | Free, Downloadable |
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| Operating language | Python |
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